PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G29220.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 448aa    MW: 49177.5 Da    PI: 10.0026
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G29220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.43.3e-10526325
                     S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaH 25
                     +e+Cr+f+r G CkyG++C++ H
  ONIVA06G29220.1  5 QEICRNFQR-GSCKYGAQCRYLH 26
                     79*******.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.0E-7228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.906229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.73E-5327IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-7526IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-7626IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MSRRQEICRN FQRGSCKYGA QCRYLHASPH QQQQQQQQQA KPNPFGFGTG SRQQQQPSFG  60
SQFQQQQQQQ QKPNPFGFGV QGANAQSRNA PGPAKPFQNK WVRDPSAPTK QAEAVQPPQA  120
QAAHTSCEDP QSCRQQISED FKNEAPIWKL TCYAHLRNGP CDIKGDISFE ELRAKAYEEG  180
KQGHSLQSIV EGERNLQNAK LMEFTNLLNS ARPSQTPSFP TMSSFPEVKN NSSFGASQTN  240
GPPVFSSFSQ IGAATNIGPG PGTTTPGMPA SSPFGHPSSA PLAAPTFGSS QMKFGVSSVF  300
GNQGSGQPFG SFQAPRFPSS KSPASSVQHR DIDRQSQELL NGMVTPPSVM FEESVGNNKN  360
ENQDDSIWLK EKWAIGEIPL DEPPQRHSRK PSGSFGSSCS SINNFLKSSA GTTKMKMKMN  420
NLVKEKWAIG ELQGQQRNST TNRRRIHE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1070080.0AK107008.1 Oryza sativa Japonica Group cDNA clone:002-120-E10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641399.10.0PREDICTED: zinc finger CCCH domain-containing protein 46
SwissprotQ5Z8070.0C3H46_ORYSJ; Zinc finger CCCH domain-containing protein 46
TrEMBLA0A0E0HV200.0A0A0E0HV20_ORYNI; Uncharacterized protein
STRINGBGIOSGA023566-PA0.0(Oryza sativa Indica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.12e-48C3H family protein